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Research Group, Pediatric Hematology and Oncology

Headed by PD. Dr. Jan-Henning Klusmann and Dr. rer. nat. Dirk Heckl, we aim to understand the molecular basis that underlies the development of acute myeloid leukemia (AML). In order to achieve this goal and model this disease, we use state-of-the-art techniques including a variety of CRISPR-based techniques and next generation sequencing.

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RESEARCH BLOG

Learn about early results as they happen.

Modeling leukemogenesis with CRISPR-Cas9

June 6th, 2017|

Two publications in one day: 1) Leveraging the CRISPR-Cas9 system to accurately model translocation-driven leukemogenesis yields new insights into the importance of environmental cues in disease induction.

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RESEARCH PROJECTS

Explore our daily work in science.

Long non-coding RNAs

In the post-genomic era, the ongoing discovery of transcriptional products from non-coding regions of the genome continues to raise fundamental questions of biology. Long non-coding RNAs are a versatile class of transcripts, which add a new layer of complexity to the regulatory networks behind normal and malignant hematopoiesis.

MicroRNAs

MicroRNAs are short, non-coding, master post-transcriptional regulators of gene expression. They have been established as key players in developmental and physiological processes, as well as in pathological ones such as cancer. We have long been interested in the roles of microRNAs during both leukemic transformation and normal blood formation.

GATA1s in Down syndrome AML

Children with Down syndrome (trisomy 21) have a 20-fold greater risk of developing myeloid leukemia. Of neonates with Down syndrome, 10% are diagnosed with transient leukemia, of which 30% develop full-blown leukemia within three years. We are investigating the additional genetic hits that co-operate with GATA1s to drive this progression.

CRISPR-Cas9 methods to model AML

The discovery and application of CRISPR-Cas9 has enhanced genome editing, overcoming a number of the limitations seen with previous genome editing tools. The system is efficient and simple, and acts at the endogenous locus on cellular DNA – both a major advance and advantage, with respect to achieving more physiological conditions.

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Battling leukemia daily

Exploring the basis of leukemia with functional genomics.

The first step towards developing specific therapies – that eradicate leukemia cells but spare normal cells of the human body – is to understand how leukemia evolves. The key purpose of our daily work is to link genetic perturbations to biological processes involved in leukemia. This simple principle is central to our research efforts and is true for reverse-genetic (genotype-to-phenotype) as well as forward-genetic approaches (phenotype-to-genotype). In our work, molecular genetics and the struggle to cure leukemia thus meet on a daily basis.

By applying genome editing, we elucidate the molecular processes induced by numerous known mutations that we and others identified in leukemia genomes. This has enabled new understanding of leukemic transformation in children with Down syndrome, and of Polycomb Repressive Complex 2 and chromosomal rearrangements in pediatric leukemia. Beyond genetic mutations, we mapped transcriptional landscapes of leukemia and normal hematopoiesis, providing further insights into the cellular networks hijacked by this disease.

Refining the genotype-phenotype correlations in leukemia permits us to next uncover weaknesses and markers that improve patient survival. Towards this goal, we apply forward-genetic screens based on gene inactivation and targeted perturbation of gene expression (CRISPRi/a), via the CRISPR-Cas9 system. With the integration of known drug response profiles, these studies will help us develop new treatment strategies – a point we have proven by introducing histone deacetylase inhibitors as an effective class of drugs for Down syndrome leukemia.

About our scientific work

The overarching aim of our research is to develop novel, cancer-specific, patient-orientated  treatment options for children with AML.

Among the different subtypes of AML, we have focused our research on children with Down syndrome, who are significantly predisposed towards developing AML and present with increased sensitivity towards treatment-related toxicities. Over several years, we have contributed to identifying coding and non-coding genes on chromosome 21 that are involved in disease pathogenesis. We uncovered a complex transcriptional network that is deregulated during malignant transformation, at the center of which is GATA1 – a crucial factor for developing Down syndrome myeloid leukemia. With advanced molecular biology methodologies, we aim to delineate the mechanisms and interaction partners of GATA1s, the oncogenic network on chromosome 21, and co-occurring mutations during the transformation into Down syndrome AML.

The role of non-coding RNAs in AML is another central interest of ours. Considered to be cellular “junk” for decades, insights into the transcriptome have since revealed their key roles as regulators of gene expression. With our non-coding RNA atlas of the human blood system covering the entire hematopoietic hierarchy as well as pediatric acute myeloid leukemias, we have built a foundation from which to decipher pathologic mechanisms guided by non-coding RNAs.

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